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RPL31P21 ribosomal protein L31 pseudogene 21 [ Homo sapiens (human) ]

Gene ID: 100270988, updated on 17-Sep-2024

Summary

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Official Symbol
RPL31P21provided by HGNC
Official Full Name
ribosomal protein L31 pseudogene 21provided by HGNC
Primary source
HGNC:HGNC:36245
See related
Ensembl:ENSG00000241400 AllianceGenome:HGNC:36245
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL31_8_410
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Genomic context

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See RPL31P21 in Genome Data Viewer
Location:
3q23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (141258418..141258779)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (144006009..144006370)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (140977260..140977621)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:140661115-140661962 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20620 Neighboring gene solute carrier family 25 member 36 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:140789226-140789769 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:140789770-140790312 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:140792837-140793422 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:140802197-140802706 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:140805486-140806259 Neighboring gene splA/ryanodine receptor domain and SOCS box containing 4 Neighboring gene NANOG hESC enhancer GRCh37_chr3:140821789-140822305 Neighboring gene NANOG hESC enhancer GRCh37_chr3:140923620-140924130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:140925635-140926136 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:140978638-140979382 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_64847 Neighboring gene 2-phosphoxylose phosphatase 1 Neighboring gene uncharacterized LOC124909441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20623 Neighboring gene PHF5A pseudogene 7 Neighboring gene zinc finger and BTB domain containing 38 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:141086748-141087947 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20625 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:141092856-141093449 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20626 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20630 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:141111788-141112397 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:141112398-141113008 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14775 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20631 Neighboring gene uncharacterized LOC124906291

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010728.1 

    Range
    101..462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    141258418..141258779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    144006009..144006370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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