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SEPTIN7P13 septin 7 pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 100287497, updated on 22-Oct-2024

Summary

Official Symbol
SEPTIN7P13provided by HGNC
Official Full Name
septin 7 pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:55092
See related
Ensembl:ENSG00000290989 AllianceGenome:HGNC:55092
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in prostate (RPKM 1.5), testis (RPKM 1.4) and 24 other tissues See more
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Genomic context

See SEPTIN7P13 in Genome Data Viewer
Location:
1q42.11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (223992730..224033859)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (223182482..223223567)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (224180432..224221561)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:224136303-224136802 Neighboring gene general transcription factor IIi pseudogene 20 Neighboring gene capicua transcriptional repressor pseudogene 5 Neighboring gene RNA, U6 small nuclear 1319, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180107-224180730 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:224180731-224181352 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199262-224199956 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:224199957-224200650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2594 Neighboring gene uncharacterized LOC105373061 Neighboring gene uncharacterized LOC105373056 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2595 Neighboring gene RN7SK pseudogene 49

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136590.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138393, DA132394
    Related
    ENST00000782406.1
  2. NR_136591.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138393, AK026836, AK124970, DA132394, DB083170
    Related
    ENST00000782405.1
  3. NR_136592.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138393, AK026836, AK124970, BX281887, DA229030, DB083170
    Related
    ENST00000449219.3
  4. NR_136593.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138393, DA132394

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    223992730..224033859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    223182482..223223567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)