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Zfp605 zinc finger protein 605 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100365779, updated on 1-Aug-2024

Summary

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Symbol
Zfp605provided by RGD
Full Name
zinc finger protein 605provided by RGD
Primary source
RGD:2318406
See related
EnsemblRapid:ENSRNOG00000037428 AllianceGenome:RGD:2318406
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in positive regulation of transcription by RNA polymerase II. Orthologous to human ZNF605 (zinc finger protein 605). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 66.1), Adrenal (RPKM 30.5) and 9 other tissues See more
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Genomic context

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See Zfp605 in Genome Data Viewer
Location:
12q16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (52202487..52234782, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (46542771..46575074, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (52606554..52670918, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene golgin A3 Neighboring gene uncharacterized LOC134481217 Neighboring gene checkpoint with forkhead and ring finger domains Neighboring gene RIKEN cDNA B230307C23 gene like Neighboring gene GTP binding protein 6 (putative) Neighboring gene phosphatidylinositol-specific phospholipase C, X domain containing 1 Neighboring gene zinc finger protein 950 like 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 350; zinc finger protein 605
Names
mCG142312-like
zinc finger protein 350-like
zinc finger protein 850-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432381.1 → NP_001419310.1  zinc finger protein 605 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  2. NM_001432382.1 → NP_001419311.1  zinc finger protein 605 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  3. NM_001432383.1 → NP_001419312.1  zinc finger protein 605 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  4. NM_001432384.1 → NP_001419313.1  zinc finger protein 605 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  5. NM_001432385.1 → NP_001419314.1  zinc finger protein 605 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  6. NM_001432386.1 → NP_001419315.1  zinc finger protein 605 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  7. NM_001432387.1 → NP_001419316.1  zinc finger protein 605 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  8. NM_001432388.1 → NP_001419317.1  zinc finger protein 605 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  9. NM_001432389.1 → NP_001419318.1  zinc finger protein 605 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  10. NM_001432390.1 → NP_001419319.1  zinc finger protein 605 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  11. NM_001432391.1 → NP_001419320.1  zinc finger protein 605 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  12. NM_001432392.1 → NP_001419321.1  zinc finger protein 605 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  13. NM_001432393.1 → NP_001419322.1  zinc finger protein 605 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  14. NM_001432394.1 → NP_001419323.1  zinc finger protein 605 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  15. NM_001432395.1 → NP_001419324.1  zinc finger protein 605 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  16. NM_001432396.1 → NP_001419325.1  zinc finger protein 605 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  17. NM_001432397.1 → NP_001419326.1  zinc finger protein 605 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  18. NM_001432398.1 → NP_001419327.1  zinc finger protein 605 isoform 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  19. NM_001432399.1 → NP_001419328.1  zinc finger protein 605 isoform 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  20. NM_001432400.1 → NP_001419329.1  zinc finger protein 605 isoform 5

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

RNA

  1. NR_197282.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

  2. NR_197283.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    52202487..52234782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063271811.1 → XP_063127881.1  zinc finger protein 605 isoform X3

  2. XM_017598571.3 → XP_017454060.1  zinc finger protein 605 isoform X1

    UniProtKB/TrEMBL
    F1M278
    Conserved Domains (5) summary
    smart00349
    Location:8 → 63
    KRAB; krueppel associated box
    COG5048
    Location:362 → 750
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535 → 555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 46
    KRAB; KRAB box
    pfam13465
    Location:632 → 656
    zf-H2C2_2; Zinc-finger double domain

  3. XM_017598574.3 → XP_017454063.1  zinc finger protein 605 isoform X2

    UniProtKB/TrEMBL
    F1M278
    Conserved Domains (3) summary
    COG5048
    Location:296 → 684
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:566 → 590
    zf-H2C2_2; Zinc-finger double domain

  4. XM_017598575.3 → XP_017454064.1  zinc finger protein 605 isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:264 → 652
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:437 → 457
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_017598568.3 → XP_017454057.1  zinc finger protein 605 isoform X1

    UniProtKB/TrEMBL
    F1M278
    Related
    ENSRNOP00000044439.5, ENSRNOT00000041981.6
    Conserved Domains (5) summary
    smart00349
    Location:8 → 63
    KRAB; krueppel associated box
    COG5048
    Location:362 → 750
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535 → 555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 46
    KRAB; KRAB box
    pfam13465
    Location:632 → 656
    zf-H2C2_2; Zinc-finger double domain

  6. XM_063271807.1 → XP_063127877.1  zinc finger protein 605 isoform X3

  7. XM_063271812.1 → XP_063127882.1  zinc finger protein 605 isoform X3

  8. XM_017598572.3 → XP_017454061.1  zinc finger protein 605 isoform X1

    UniProtKB/TrEMBL
    F1M278
    Conserved Domains (5) summary
    smart00349
    Location:8 → 63
    KRAB; krueppel associated box
    COG5048
    Location:362 → 750
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535 → 555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 46
    KRAB; KRAB box
    pfam13465
    Location:632 → 656
    zf-H2C2_2; Zinc-finger double domain

  9. XM_063271806.1 → XP_063127876.1  zinc finger protein 605 isoform X2

  10. XM_063271810.1 → XP_063127880.1  zinc finger protein 605 isoform X3

  11. XM_017598569.3 → XP_017454058.1  zinc finger protein 605 isoform X1

    UniProtKB/TrEMBL
    F1M278
    Related
    ENSRNOP00000103928.1, ENSRNOT00000161815.1
    Conserved Domains (5) summary
    smart00349
    Location:8 → 63
    KRAB; krueppel associated box
    COG5048
    Location:362 → 750
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535 → 555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 46
    KRAB; KRAB box
    pfam13465
    Location:632 → 656
    zf-H2C2_2; Zinc-finger double domain

  12. XM_063271808.1 → XP_063127878.1  zinc finger protein 605 isoform X3

  13. XM_017598570.3 → XP_017454059.1  zinc finger protein 605 isoform X1

    UniProtKB/TrEMBL
    F1M278
    Conserved Domains (5) summary
    smart00349
    Location:8 → 63
    KRAB; krueppel associated box
    COG5048
    Location:362 → 750
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:535 → 555
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 46
    KRAB; KRAB box
    pfam13465
    Location:632 → 656
    zf-H2C2_2; Zinc-finger double domain

  14. XM_063271809.1 → XP_063127879.1  zinc finger protein 605 isoform X3

  15. XM_063271813.1 → XP_063127883.1  zinc finger protein 350 isoform X4

RNA

  1. XR_010056633.1 RNA Sequence

  2. XR_005492102.2 RNA Sequence

  3. XR_010056630.1 RNA Sequence

  4. XR_010056631.1 RNA Sequence

  5. XR_010056629.1 RNA Sequence

  6. XR_010056634.1 RNA Sequence

  7. XR_010056632.1 RNA Sequence

  8. XR_010056628.1 RNA Sequence

  9. XR_010056635.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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