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Gm13648 predicted gene 13648 [ Mus musculus (house mouse) ]

Gene ID: 100415901, updated on 22-Oct-2024

Summary

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Official Symbol
Gm13648provided by MGI
Official Full Name
predicted gene 13648provided by MGI
Primary source
MGI:MGI:3652033
See related
Ensembl:ENSMUSG00000086549 AllianceGenome:MGI:3652033
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in colon adult (RPKM 19.2), stomach adult (RPKM 15.8) and 12 other tissues See more
Orthologs
all
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Genomic context

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See Gm13648 in Genome Data Viewer
Location:
4 E2; 4 87.94 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (156137172..156144259, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (156052715..156059802, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16008 Neighboring gene tumor necrosis factor receptor superfamily, member 18 Neighboring gene tubulin tyrosine ligase-like family, member 10 Neighboring gene microRNA 200a Neighboring gene microRNA 429 Neighboring gene microRNA 200b Neighboring gene STARR-seq mESC enhancer starr_12282 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444299-155444408 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444441-155444699 Neighboring gene predicted gene, 52714 Neighboring gene RIKEN cDNA 9430015G10 gene Neighboring gene STARR-positive B cell enhancer ABC_E1672

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Transcription Factor Hepatocyte Nuclear Factor-1β (HNF-1β) Regulates MicroRNA-200 Expression through a Long Noncoding RNA. Hajarnis SS, et al. J Biol Chem, 2015 Oct 9. PMID 26292219, Free PMC Article
  2. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  3. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • miR-200b/200a/429 miRNA cluster host

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132444.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC048384
    Related
    ENSMUST00000138361.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    156137172..156144259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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