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Msantd5f3 Myb/SANT DNA binding domain containing 5 family member 3 [ Mus musculus (house mouse) ]

Gene ID: 100502896, updated on 17-Aug-2024

Summary

Official Symbol
Msantd5f3provided by MGI
Official Full Name
Myb/SANT DNA binding domain containing 5 family member 3provided by MGI
Primary source
MGI:MGI:3702316
See related
Ensembl:ENSMUSG00000095935 AllianceGenome:MGI:3702316
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm11238
Summary
This gene belongs to a family of related genes tandemly arranged in two clusters on chromosome 4. This family, which appears to be mouse-specific and composed of multiple highly similar members, is supported by limited transcript data. Members of the family maintain an intact open reading frame although the encoded protein has no known function. This gene is supported by transcripts and inferred from alignment of paralogous transcripts. [provided by RefSeq, Apr 2013]
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
4 C3; 4 36.06 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (73569147..73575529)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (73650910..73657292)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene Myb/SANT DNA binding domain containing 5 family member 5 Neighboring gene Myb/SANT DNA binding domain containing 5 family member 4 Neighboring gene Myb/SANT DNA binding domain containing 5 family member 2 Neighboring gene Myb/SANT DNA binding domain containing 5 family member 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100502896

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277512.1NP_001264441.1  uncharacterized protein LOC100502896

    Status: VALIDATED

    Source sequence(s)
    BX294159
    UniProtKB/TrEMBL
    F2Z478
    Related
    ENSMUSP00000081519.4, ENSMUST00000084479.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    73569147..73575529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)