U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

3300002A11Rik RIKEN cDNA 3300002A11 gene [ Mus musculus (house mouse) ]

Gene ID: 100503812, updated on 22-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
3300002A11Rikprovided by MGI
Official Full Name
RIKEN cDNA 3300002A11 geneprovided by MGI
Primary source
MGI:MGI:1919073
See related
Ensembl:ENSMUSG00000033731 AllianceGenome:MGI:1919073
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2700016B18Rik
Expression
Biased expression in lung adult (RPKM 3.7), ovary adult (RPKM 1.9) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See 3300002A11Rik in Genome Data Viewer
Location:
12 E; 12 50.0 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (99307290..99328087)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (99341031..99361828)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene forkhead box N3 Neighboring gene centromere protein W pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100567328-100567481 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100567519-100567702 Neighboring gene predicted gene, 46371 Neighboring gene VISTA enhancer mm12 Neighboring gene STARR-positive B cell enhancer ABC_E1861 Neighboring gene STARR-seq mESC enhancer starr_33022 Neighboring gene STARR-positive B cell enhancer ABC_E7165 Neighboring gene STARR-seq mESC enhancer starr_33023 Neighboring gene STARR-seq mESC enhancer starr_33024 Neighboring gene predicted gene, 51999 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:100797804-100797957 Neighboring gene STARR-positive B cell enhancer mm9_chr12:100801158-100801458 Neighboring gene predicted gene, 26839 Neighboring gene predicted gene, 53755

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166805.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125409
    Related
    ENSMUST00000126476.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    99307290..99328087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.