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si:dkeyp-114g9.1 oocyte-specific F-box protein [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100505412, updated on 14-Dec-2023

Summary

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Gene symbol
si:dkeyp-114g9.1
Gene description
oocyte-specific F-box protein
See related
Ensembl:ENSOMYG00000046496
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
fbos
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Genomic context

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See si:dkeyp-114g9.1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 8 NC_048572.1 (21231292..21241150, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 8 NC_035084.1 (18240224..18249824, complement)

Chromosome 8 - NC_048572.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein of 85 kDa-like Neighboring gene minichromosome maintenance 9 homologous recombination repair factor Neighboring gene cardiac phospholamban Neighboring gene solute carrier family 35 member F1 Neighboring gene dehydrodolichyl diphosphate synthase complex subunit nus1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Berthelot C, et al. Nat Commun, 2014 Apr 22. PMID 24755649, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100505412

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197208.2 → NP_001184137.1  uncharacterized protein LOC100505412

    See identical proteins and their annotated locations for NP_001184137.1

    Status: PREDICTED

    Source sequence(s)
    HQ201417
    UniProtKB/TrEMBL
    A0A8C7V2Q6, E2JEI9
    Related
    ENSOMYP00000103316.2, ENSOMYT00000112042.2
    Conserved Domains (1) summary
    pfam12937
    Location:41 → 87
    F-box-like; F-box-like

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    21231292..21241150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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