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LOC100505716 uncharacterized LOC100505716 [ Homo sapiens (human) ]

Gene ID: 100505716, updated on 17-Sep-2024

Summary

Gene symbol
LOC100505716
Gene description
uncharacterized LOC100505716
See related
Ensembl:ENSG00000223522
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC100505716 in Genome Data Viewer
Location:
2p23.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (28307691..28310459, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (28351009..28353777, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (28530558..28533326, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene BRISC and BRCA1 A complex member 2 Neighboring gene uncharacterized LOC100505736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28472667-28473167 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28487601-28488102 Neighboring gene uncharacterized LOC124907745 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15514 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:28498303-28499502 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:28532030-28533229 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28542037-28543032 Neighboring gene ribosomal protein L23a pseudogene 34 Neighboring gene MPRA-validated peak3639 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28562837-28563456 Neighboring gene uncharacterized LOC105374381 Neighboring gene uncharacterized LOC105374382 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:28582187-28583386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28583785-28584472

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093690, BC041993
    Related
    ENST00000418963.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    28307691..28310459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    28351009..28353777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)