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LINC00445 long intergenic non-protein coding RNA 445 [ Homo sapiens (human) ]

Gene ID: 100507114, updated on 17-Jun-2024

Summary

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Official Symbol
LINC00445provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 445provided by HGNC
Primary source
HGNC:HGNC:42782
See related
Ensembl:ENSG00000236036 AllianceGenome:HGNC:42782
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.7) See more
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Genomic context

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See LINC00445 in Genome Data Viewer
Location:
13q13.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (35697524..35699256)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (34915799..34917504)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (36271661..36273393)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370161 Neighboring gene uncharacterized LOC124903224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:36270618-36271214 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:36271215-36271810 Neighboring gene NANOG hESC enhancer GRCh37_chr13:36286938-36287653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:36294554-36295054 Neighboring gene NANOG hESC enhancer GRCh37_chr13:36363862-36364363 Neighboring gene doublecortin like kinase 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:36429462-36430661 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:36431613-36432152 Neighboring gene uncharacterized LOC105370163 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:36432695-36433234 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:36466409-36467608 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:36490885-36491627 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:36496595-36497587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7588 Neighboring gene NANOG hESC enhancer GRCh37_chr13:36567619-36568120 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:36587826-36589025 Neighboring gene nuclear-encoded mitochondrial tRNA-Gln (TTG) 10-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132115.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL139083

  2. NR_132116.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' exon and contains a shorter 3' exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AL139083
    Related
    ENST00000422430.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    35697524..35699256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    34915799..34917504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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