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KRTAP9-6 keratin associated protein 9-6 [ Homo sapiens (human) ]

Gene ID: 100507608, updated on 2-Nov-2024

Summary

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Official Symbol
KRTAP9-6provided by HGNC
Official Full Name
keratin associated protein 9-6provided by HGNC
Primary source
HGNC:HGNC:18914
See related
Ensembl:ENSG00000212659 AllianceGenome:HGNC:18914
Gene type
protein coding
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KAP9.6; KRTAP9.6; KRTAP9L2
Summary
Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See KRTAP9-6 in Genome Data Viewer
Location:
17q21.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (41265378..41265860)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (39421630..39422112)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:39405666-39406220 Neighboring gene keratin associated protein 9-4 Neighboring gene keratin associated protein 9-9 Neighboring gene keratin associated protein 9-11, pseudogene Neighboring gene keratin associated protein 9-7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a cluster of human high/ultrahigh sulfur keratin-associated protein genes embedded in the type I keratin gene domain on chromosome 17q12-21. Rogers MA, et al. J Biol Chem, 2001 Jun 1. PMID 11279113
  2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. Zody MC, et al. Nature, 2006 Apr 20. PMID 16625196, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
keratin-associated protein 9-6
Names
keratin associated protein 9-like 2
putative keratin-associated protein 9-2-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277331.1 → NP_001264260.1  keratin-associated protein 9-6

    See identical proteins and their annotated locations for NP_001264260.1

    Status: INFERRED

    Source sequence(s)
    AC006070
    Consensus CDS
    CCDS59286.1
    UniProtKB/Swiss-Prot
    A8MVA2
    Related
    ENSP00000375150.1, ENST00000391355.2
    Conserved Domains (2) summary
    pfam01500
    Location:37 → 160
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam13885
    Location:37 → 89
    Keratin_B2_2; Keratin, high sulfur B2 protein

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    41265378..41265860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003871092.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    30906..31430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003846481.1 → XP_003846529.1  keratin-associated protein 9-6 isoform X1

    UniProtKB/TrEMBL
    A0A140TA67
    Conserved Domains (1) summary
    pfam13885
    Location:80 → 124
    Keratin_B2_2; Keratin, high sulfur B2 protein

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NW_003871093.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    41250..41732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8MVA2.1 GenPept UniProtKB/Swiss-Prot:A8MVA2

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