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shisa2 shisa family member 2 [ Danio rerio (zebrafish) ]

Gene ID: 100537021, updated on 27-Mar-2024

Summary

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Gene symbol
shisa2
Gene description
shisa family member 2
See related
Ensembl:ENSDARG00000088232
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See shisa2 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (21345975..21364889)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (21200857..21216763)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene BOC cell adhesion associated, oncogene regulated Neighboring gene uncharacterized LOC101884469 Neighboring gene spindle and centriole associated protein 1 Neighboring gene ATPase phospholipid transporting 8A2 Neighboring gene ring finger protein (C3H2C3 type) 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein shisa-2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    21345975..21364889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003201303.5 → XP_003201351.1  protein shisa-2 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M1RJL1, E7FEC3
    Related
    ENSDARP00000105651.1, ENSDART00000126519.3
    Conserved Domains (1) summary
    pfam13908
    Location:27 → 162
    Shisa; Wnt and FGF inhibitory regulator

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395171.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    11785..15784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473762.1 → XP_021329437.1  protein shisa-2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8M9PE83
    Conserved Domains (1) summary
    pfam13908
    Location:11 → 71
    Shisa; Wnt and FGF inhibitory regulator
Nucleotide Protein
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