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LOC100652777 group 10 secretory phospholipase A2 [ Homo sapiens (human) ]

Gene ID: 100652777, updated on 17-Jun-2024

Summary

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Gene symbol
LOC100652777
Gene description
group 10 secretory phospholipase A2
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in stomach (RPKM 9.4), colon (RPKM 5.9) and 16 other tissues See more
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Genomic context

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See LOC100652777 in Genome Data Viewer
Location:
16p13.11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (14709058..14742495, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (14710083..14739373, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene bifunctional apoptosis regulator Neighboring gene RNA, U7 small nuclear 125 pseudogene Neighboring gene phospholipase A2 group X Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:14781374-14781874 Neighboring gene nuclear pore complex interacting protein family member A3 Neighboring gene nuclear pore complex interacting protein family member A2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:14860458-14860958 Neighboring gene phospholipase A2 group XE, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General protein information

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Preferred Names
group 10 secretory phospholipase A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    14709058..14742495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047435004.1 → XP_047290960.1  group 10 secretory phospholipase A2 isoform X1

  2. XM_011522790.4 → XP_011521092.1  group 10 secretory phospholipase A2 isoform X2

    UniProtKB/TrEMBL
    H3BRW4
    Conserved Domains (1) summary
    cd00125
    Location:43 → 119
    PLA2c; PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a ...

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    14710083..14739373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054314593.1 → XP_054170568.1  group 10 secretory phospholipase A2 isoform X3

    UniProtKB/Swiss-Prot
    O15496, Q14DU3, Q6NT23

  2. XM_054314596.1 → XP_054170571.1  group 10 secretory phospholipase A2 isoform X6

    UniProtKB/TrEMBL
    H3BRW4

  3. XM_054314594.1 → XP_054170569.1  group 10 secretory phospholipase A2 isoform X4

    UniProtKB/TrEMBL
    H3BRW4

  4. XM_054314595.1 → XP_054170570.1  group 10 secretory phospholipase A2 isoform X5

    UniProtKB/TrEMBL
    H3BRW4
Nucleotide Protein
Heading Accession and Version

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