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LOC100653049 keratin, type I cuticular Ha4 [ Homo sapiens (human) ]

Gene ID: 100653049, updated on 10-Dec-2024

Summary

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Gene symbol
LOC100653049
Gene description
keratin, type I cuticular Ha4
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Annotation category: only annotated on alternate loci in reference assembly
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Genomic context

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See LOC100653049 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 (ALT_REF_LOCI_1) NW_003315953.2 (49141..55289)

NW_003315953.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100505782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39567789-39568290 Neighboring gene keratin 41, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:39559942-39561141 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39550287-39550786 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39549785-39550286 Neighboring gene keratin 31 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:39537551-39538750 Neighboring gene keratin 34 Neighboring gene keratin 33B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39520859-39521360

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315953.2 Chromosome 17 Reference GRCh38.p14 ALT_REF_LOCI_1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions. Müller PM, et al. Nat Cell Biol, 2020 Apr. PMID 32203420

GeneRIFs: Gene References Into Functions

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
keratin, type I cuticular Ha4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315953.2 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    49141..55289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011547005.3 → XP_011545307.1  keratin, type I cuticular Ha4 isoform X2

    UniProtKB/TrEMBL
    A0A140TA69
    Conserved Domains (1) summary
    pfam00038
    Location:73 → 384
    Filament; Intermediate filament protein

  2. XM_003403882.6 → XP_003403930.1  keratin, type I cuticular Ha4 isoform X1

    See identical proteins and their annotated locations for XP_003403930.1

    UniProtKB/TrEMBL
    A0A140TA62, A0A140TA69
    Conserved Domains (1) summary
    pfam00038
    Location:97 → 408
    Filament; Intermediate filament protein
Nucleotide Protein
Heading Accession and Version

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