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Spin2j spindlin family, member 2J [ Mus musculus (house mouse) ]

Gene ID: 100862314, updated on 17-Aug-2024

Summary

Official Symbol
Spin2jprovided by MGI
Official Full Name
spindlin family, member 2Jprovided by MGI
Primary source
MGI:MGI:5434992
See related
Ensembl:ENSMUSG00000095770 AllianceGenome:MGI:5434992
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm21637
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
X A3.1; X
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (31521693..31523640)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (31960926..31962873)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 21420 Neighboring gene BTB domain containing 35, family member 25 Neighboring gene BTB domain containing 35, family member 22 Neighboring gene predicted gene, 46695

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC143459

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables methylated histone binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
spindlin family, member 2-like
Names
spindlin-2A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270685.1NP_001257614.1  spindlin family, member 2-like

    See identical proteins and their annotated locations for NP_001257614.1

    Status: VALIDATED

    Source sequence(s)
    CT868697
    Consensus CDS
    CCDS57740.1
    UniProtKB/TrEMBL
    A0A140T8V2, E9PWJ8, Q149L1
    Related
    ENSMUSP00000100756.3, ENSMUST00000105124.3
    Conserved Domains (1) summary
    pfam02513
    Location:2978
    Spin-Ssty; Spin/Ssty Family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    31521693..31523640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006536332.3XP_006536395.1  spindlin family, member 2-like isoform X1

    See identical proteins and their annotated locations for XP_006536395.1

    UniProtKB/TrEMBL
    A0A140T8V2, E9PWJ8, Q149L1
    Conserved Domains (1) summary
    pfam02513
    Location:2978
    Spin-Ssty; Spin/Ssty Family
  2. XM_006536333.2XP_006536396.1  spindlin family, member 2-like isoform X1

    See identical proteins and their annotated locations for XP_006536396.1

    UniProtKB/TrEMBL
    A0A140T8V2, E9PWJ8, Q149L1
    Conserved Domains (1) summary
    pfam02513
    Location:2978
    Spin-Ssty; Spin/Ssty Family