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iscub iron-sulfur cluster scaffold protein b [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100862658, updated on 14-Dec-2023

Summary

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Gene symbol
iscub
Gene description
iron-sulfur cluster scaffold protein b
See related
Ensembl:ENSOMYG00000029989
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See iscub in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (37157288..37161322)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (33892911..33897318)

Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 185 Neighboring gene chemokine receptor-like protein 1 Neighboring gene transmembrane protein 119b Neighboring gene Coronin-1C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Iron-sulfur cluster scaffold (ISCU) gene is duplicated in salmonid fish and tissue and temperature dependent expressed in rainbow trout. Verleih M, et al. Gene, 2013 Jan 10. PMID 23137639
  2. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Berthelot C, et al. Nat Commun, 2014 Apr 22. PMID 24755649, Free PMC Article
  3. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iron-sulfur cluster scaffold protein b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256846.1 → NP_001243775.1  iron-sulfur cluster scaffold protein b

    See identical proteins and their annotated locations for NP_001243775.1

    Status: PROVISIONAL

    Source sequence(s)
    HE648574
    UniProtKB/TrEMBL
    A0A8C7SC70, H6SG24
    Related
    ENSOMYP00000064720.2, ENSOMYT00000070477.2
    Conserved Domains (1) summary
    PRK11325
    Location:30 → 154
    PRK11325; scaffold protein; Provisional

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    37157288..37161322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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