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LOC100996792 dual specificity mitogen-activated protein kinase kinase 3 pseudogene [ Homo sapiens (human) ]

Gene ID: 100996792, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100996792
Gene description
dual specificity mitogen-activated protein kinase kinase 3 pseudogene
See related
Ensembl:ENSG00000283566
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 6.1), gall bladder (RPKM 2.1) and 24 other tissues See more
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Genomic context

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See LOC100996792 in Genome Data Viewer
Location:
17p11.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (21772755..21783465, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (21721568..21732291, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 (PATCHES) NW_003315950.2 (425119..435829, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101930665 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:21516952-21517190 Neighboring gene potassium inwardly rectifying channel subfamily J member 18 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:21561832-21562394 Neighboring gene abhydrolase domain containing 15 pseudogene Neighboring gene MPRA-validated peak2767 silencer Neighboring gene NCOR1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_061548.1 

    Range
    101..10811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    21772755..21783465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    21721568..21732291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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