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CTDSP2 CTD small phosphatase 2 [ Homo sapiens (human) ]

Gene ID: 10106, updated on 10-Dec-2024

Summary

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Official Symbol
CTDSP2provided by HGNC
Official Full Name
CTD small phosphatase 2provided by HGNC
Primary source
HGNC:HGNC:17077
See related
Ensembl:ENSG00000175215 MIM:608711; AllianceGenome:HGNC:17077
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OS4; PSR2; SCP2
Summary
Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in protein dephosphorylation. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in lung (RPKM 63.4), ovary (RPKM 53.0) and 25 other tissues See more
Orthologs
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Genomic context

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See CTDSP2 in Genome Data Viewer
Location:
12q14.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (57819927..57846729, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (57788296..57815097, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (58213710..58240512, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:58176331-58177200 Neighboring gene Ts translation elongation factor, mitochondrial Neighboring gene RNA, U6 small nuclear 1083, pseudogene Neighboring gene advillin Neighboring gene microRNA 26a-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6560 Neighboring gene uncharacterized LOC105369783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6561 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:58231763-58232383 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4594 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4595 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4596 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4597 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4598 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4599 Neighboring gene uncharacterized LOC124902948 Neighboring gene uncharacterized LOC283387 Neighboring gene Sharpr-MPRA regulatory region 12928 Neighboring gene Sharpr-MPRA regulatory region 14680 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:58286906-58287406 Neighboring gene uncharacterized LOC101927608

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Characterization of a highly conserved gene (OS4) amplified with CDK4 in human sarcomas. Su YA, et al. Oncogene, 1997 Sep. PMID 9315096
  2. Direct isolation of genes encoded within a homogeneously staining region by chromosome microdissection. Su YA, et al. Proc Natl Acad Sci U S A, 1994 Sep 13. PMID 8090779, Free PMC Article
  3. Small carboxyl-terminal domain phosphatase 2 attenuates androgen-dependent transcription. Thompson J, et al. EMBO J, 2006 Jun 21. PMID 16724108, Free PMC Article
  4. A strategy for cloning the hereditary hemochromatosis gene. Beutler E, et al. Blood Cells Mol Dis, 1995. PMID 8673473
  5. Tumor suppressor properties of the small C-terminal domain phosphatases in non-small cell lung cancer. Krasnov GS, et al. Biosci Rep, 2019 Dec 20. PMID 31774910, Free PMC Article

See all (34) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Tumor suppressor properties of the small C-terminal domain phosphatases in non-small cell lung cancer.
    Title: Tumor suppressor properties of the small C-terminal domain phosphatases in non-small cell lung cancer.
  2. CTDSP2 induces p21(Cip1/Waf1) through increasing the activity of Ras.
    Title: FOXO target gene CTDSP2 regulates cell cycle progression through Ras and p21(Cip1/Waf1).
  3. SCP2 acts as a phosphatase for regulatory phosphorylations in the linker region of Smad1 and Smad2
    Title: Dephosphorylation of the linker regions of Smad1 and Smad2/3 by small C-terminal domain phosphatases has distinct outcomes for bone morphogenetic protein and transforming growth factor-beta pathways.
  4. These results suggest that SCP2 is involved in promoter clearance during steroid-activated transcription.
    Title: Small carboxyl-terminal domain phosphatase 2 attenuates androgen-dependent transcription.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables MAP kinase serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II CTD heptapeptide repeat S2 phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II CTD heptapeptide repeat S7 phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II CTD heptapeptide repeat T4 phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II CTD heptapeptide repeat Y1 phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables calmodulin-dependent protein phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone H2AXS140 phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of G1/S transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
involved_in protein dephosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2
Names
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
NLI-interacting factor 2
conserved gene amplified in osteosarcoma
nuclear LIM interactor-interacting factor 2
protein OS-4
small C-terminal domain phosphatase 2
small CTD phosphatase 2
NP_005721.3
XP_005268613.1
XP_054226696.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_005730.4 → NP_005721.3  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2

    See identical proteins and their annotated locations for NP_005721.3

    Status: VALIDATED

    Source sequence(s)
    AC121759, BC018922, CN313995
    Consensus CDS
    CCDS41801.1
    UniProtKB/Swiss-Prot
    A8K5H4, O14595, Q53ZR2, Q6NZY3, Q9UEX1
    Related
    ENSP00000381148.2, ENST00000398073.7
    Conserved Domains (1) summary
    TIGR02251
    Location:101 → 260
    HIF-SF_euk; Dullard-like phosphatase domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    57819927..57846729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005268556.3 → XP_005268613.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X1

    See identical proteins and their annotated locations for XP_005268613.1

    Conserved Domains (1) summary
    TIGR02251
    Location:107 → 266
    HIF-SF_euk; Dullard-like phosphatase domain

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    57788296..57815097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054370721.1 → XP_054226696.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O14595.2 GenPept UniProtKB/Swiss-Prot:O14595

Gene LinkOut

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