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rtgdnf glial cell line-derived neurotrophic factor [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 101268965, updated on 8-Mar-2024

Summary

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Gene symbol
rtgdnf
Gene description
glial cell line-derived neurotrophic factor
See related
Ensembl:ENSOMYG00000004348
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See rtgdnf in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 6 NC_048570.1 (9194633..9196133, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 6 NC_035082.1 (6240536..6242012)

Chromosome 6 - NC_048570.1Genomic Context describing neighboring genes Neighboring gene kinetochore protein NDC80 homolog Neighboring gene kinetochore protein NDC80 homolog Neighboring gene pikachurin Neighboring gene opsin 4xb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Berthelot C, et al. Nat Commun, 2014 Apr 22. PMID 24755649, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glial cell-derived neurotrophic factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peripheral nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of branching involved in ureteric bud morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glial cell line-derived neurotrophic factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281402.1 → NP_001268331.1  glial cell line-derived neurotrophic factor precursor

    See identical proteins and their annotated locations for NP_001268331.1

    Status: PROVISIONAL

    Source sequence(s)
    AB787266
    UniProtKB/TrEMBL
    M1VK54
    Related
    ENSOMYP00000008606.2, ENSOMYT00000009528.2
    Conserved Domains (1) summary
    pfam00019
    Location:141 → 235
    TGF_beta; Transforming growth factor beta like domain

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048570.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    9194633..9196133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials