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cfhl5 complement factor H like 5 [ Danio rerio (zebrafish) ]

Gene ID: 101884308, updated on 2-Nov-2024

Summary

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Official Symbol
cfhl5provided by ZNC
Official Full Name
complement factor H like 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-782
See related
Ensembl:ENSDARG00000105052 AllianceGenome:ZFIN:ZDB-GENE-050208-782
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-114d20.1
Summary
Orthologous to human CFHR4 (complement factor H related 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See cfhl5 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (23598092..23612810, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (23571528..23586347, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene assembly factor for spindle microtubules Neighboring gene complement factor H-related protein 3-like Neighboring gene complement factor H like 4 Neighboring gene complement factor H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Transcriptomic characterization of adult zebrafish infected with Streptococcus agalactiae. Wu XM, et al. Fish Shellfish Immunol, 2019 Nov. PMID 31533079
  2. Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. Zheng W, et al. PLoS One, 2013. PMID 23349717, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
complement factor H like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386840.1 → NP_001373769.1  complement factor H like 5 precursor

    Status: VALIDATED

    Source sequence(s)
    BX005398, CR388178
    UniProtKB/TrEMBL
    A0A8M2B8I9, A0A8M9P4R3
    Related
    ENSDARP00000130200.1, ENSDART00000165885.2
    Conserved Domains (2) summary
    smart00032
    Location:42 → 85
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:85 → 340
    PHA02927; secreted complement-binding protein; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    23598092..23612810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068216250.1 → XP_068072351.1  complement factor H like 5 isoform X1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395107.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    144263..169103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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