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znf512b zinc finger protein 512B [ Danio rerio (zebrafish) ]

Gene ID: 101885988, updated on 2-Nov-2024

Summary

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Official Symbol
znf512bprovided by ZNC
Official Full Name
zinc finger protein 512Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-284
See related
Ensembl:ENSDARG00000071055 AllianceGenome:ZFIN:ZDB-GENE-090313-284
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-256k13.2
Summary
Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF512B (zinc finger protein 512B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See znf512b in Genome Data Viewer
Location:
chromosome: 23
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (13375745..13521556)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (13619239..13760705)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 10b Neighboring gene sterile alpha motif domain-containing protein 3-like Neighboring gene sb:cb449 Neighboring gene uncharacterized LOC103909669 Neighboring gene uridine-cytidine kinase 1-like 1b Neighboring gene microRNA mir-1388

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A novel inducible mutagenesis screen enables to isolate and clone both embryonic and adult zebrafish mutants. Ma Z, et al. Sci Rep, 2017 Sep 4. PMID 28871129, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 512B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    13375745..13521556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162004.5 → XP_005162061.1  zinc finger protein 512B isoform X1

    UniProtKB/TrEMBL
    A0A8M2B8T6

  2. XM_005162005.5 → XP_005162062.1  zinc finger protein 512B isoform X2

    UniProtKB/TrEMBL
    A0A8M2B8T8

  3. XM_009296700.4 → XP_009294975.1  zinc finger protein 512B isoform X3

    UniProtKB/TrEMBL
    A0A8M3ANG6, K7DY35
    Related
    ENSDARP00000126361.1, ENSDART00000151947.3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395133.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    45113..110127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473575.2 → XP_021329250.2  zinc finger protein 512B isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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