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trarg1a trafficking regulator of GLUT4 (SLC2A4) 1a [ Danio rerio (zebrafish) ]

Gene ID: 101886018, updated on 17-Aug-2024

Summary

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Official Symbol
trarg1aprovided by ZNC
Official Full Name
trafficking regulator of GLUT4 (SLC2A4) 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-131121-306
See related
Ensembl:ENSDARG00000090481 AllianceGenome:ZFIN:ZDB-GENE-131121-306
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tusc5; tusc5a; si:dkey-151p21.9
Summary
Acts upstream of or within axon extension. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in Rohon-Beard neurons; hindbrain; and trigeminal sensory neurons. Orthologous to human TRARG1 (trafficking regulator of GLUT4 (SLC2A4) 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (24845397..24869787, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (24911155..24934531, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene carboxypeptidase D, a Neighboring gene golgi SNAP receptor complex member 1 Neighboring gene aryl hydrocarbon receptor interacting protein-like 1 Neighboring gene microRNA 22a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of possible downstream genes required for the extension of peripheral axons in primary sensory neurons. Aoki M, et al. Biochem Biophys Res Commun, 2014 Mar 7. PMID 24513284
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within axon extension IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tumor suppressor candidate 5
Names
tumor suppressor candidate 5a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    24845397..24869787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466430.1 → XP_021322105.1  tumor suppressor candidate 5

    UniProtKB/TrEMBL
    A0A8M2B4G6, E7F6S5
    Related
    ENSDARP00000110979.1, ENSDART00000127047.3
    Conserved Domains (1) summary
    pfam04505
    Location:99 → 166
    CD225; Interferon-induced transmembrane protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394947.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    604635..608765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002457435.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395323.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    197514..219173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157620.4 → XP_005157677.1  tumor suppressor candidate 5

    UniProtKB/TrEMBL
    A0A8M2B4G6, E7F6S5
    Conserved Domains (1) summary
    pfam04505
    Location:99 → 166
    CD225; Interferon-induced transmembrane protein
Nucleotide Protein
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