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LINC02653 long intergenic non-protein coding RNA 2653 [ Homo sapiens (human) ]

Gene ID: 101926942, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02653provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2653provided by HGNC
Primary source
HGNC:HGNC:54138
See related
Ensembl:ENSG00000236373 AllianceGenome:HGNC:54138
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02653 in Genome Data Viewer
Location:
10q23.31
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (90402521..90540805, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (91286096..91424394, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (92162278..92300562, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378426 Neighboring gene NANOG hESC enhancer GRCh37_chr10:91951269-91951830 Neighboring gene RN7SK pseudogene 143 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:92010611-92011239 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:92061535-92062047 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:92062048-92062560 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:92078769-92079504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:92079505-92080238 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:92243978-92245177 Neighboring gene uncharacterized LOC124902478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3755 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:92564844-92565562 Neighboring gene 5-hydroxytryptamine receptor 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2601

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110657.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359919, BC030278
    Related
    ENST00000418379.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    90402521..90540805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    91286096..91424394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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Research Materials