U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101927089 uncharacterized LOC101927089 [ Homo sapiens (human) ]

Gene ID: 101927089, updated on 22-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC101927089
Gene description
uncharacterized LOC101927089
See related
Ensembl:ENSG00000283058
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.3) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101927089 in Genome Data Viewer
Location:
2p16.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (50620924..50632732)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (50617052..50628761)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:50163910-50164578 Neighboring gene ribosomal protein L7 pseudogene 13 Neighboring gene VISTA enhancer hs2343 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:50231574-50232307 Neighboring gene neurexin 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:50311271-50311784 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:50311785-50312297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:50572921-50573860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:50573861-50574798 Neighboring gene MPRA-validated peak3699 silencer Neighboring gene VISTA enhancer hs1348 Neighboring gene MT-CO1 pseudogene 42 Neighboring gene microRNA 8485 Neighboring gene uncharacterized LOC124906006

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    50620924..50632732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_245002.5 RNA Sequence

  2. XR_940083.2 RNA Sequence

  3. XR_245001.4 RNA Sequence

    Related
    ENST00000827505.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    50617052..50628761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072062.1 RNA Sequence

  2. XR_007072063.1 RNA Sequence

  3. XR_007072061.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials