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LINC02179 long intergenic non-protein coding RNA 2179 [ Homo sapiens (human) ]

Gene ID: 101927228, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02179provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2179provided by HGNC
Primary source
HGNC:HGNC:53041
See related
Ensembl:ENSG00000261623 AllianceGenome:HGNC:53041
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02179 in Genome Data Viewer
Location:
16q12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (49466106..49469875)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (55263809..55267580)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903689 Neighboring gene Sharpr-MPRA regulatory region 1482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49388576-49389094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49389095-49389612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49390729-49391657 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:49403360-49403941 Neighboring gene uncharacterized LOC105371244 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49407168-49407898 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49407899-49408629 Neighboring gene chromosome 16 open reading frame 78 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49464652-49465152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49465153-49465653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49475185-49476132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49477189-49477690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49498687-49499188 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49526437-49527060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49527061-49527682 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10804 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10805 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49557435-49557934 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49561586-49562584 Neighboring gene zinc finger protein 423 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49572734-49573234 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49572197-49572697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49582132-49582944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49582945-49583756 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49591427-49592314 Neighboring gene ADAM metallopeptidase domain 3B (pseudogene) Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:49602152-49602652 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:49602653-49603153 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49630850-49631370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49649156-49649656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49649657-49650157 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49651175-49651675 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:49681934-49683133 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49695665-49696164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49695163-49695664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:49696971-49697505 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49697506-49698039 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:49714232-49715152 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49729865-49730546 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49730547-49731228 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49731229-49731910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49731911-49732592 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49732593-49733274 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49733957-49734638 Neighboring gene VISTA enhancer hs625 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:49738731-49739411 Neighboring gene mitochondrial ribosomal protein S21 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features. Lanzós A, et al. Sci Rep, 2017 Jan 27. PMID 28128360, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • RP11-189E14.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    49466106..49469875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_243442.1 RNA Sequence

    Related
    ENST00000561523.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    55263809..55267580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086460.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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