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LINC01961 long intergenic non-protein coding RNA 1961 [ Homo sapiens (human) ]

Gene ID: 101927424, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01961provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1961provided by HGNC
Primary source
HGNC:HGNC:52786
See related
Ensembl:ENSG00000234148 AllianceGenome:HGNC:52786
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.5), spleen (RPKM 0.5) and 1 other tissue See more
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Genomic context

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See LINC01961 in Genome Data Viewer
Location:
2q14.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113512124..113515294)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (113936655..113939825)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114269701..114272871)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16421 Neighboring gene Zn regulated GTPase metalloprotein activator 1B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114257455-114257992 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114257993-114258528 Neighboring gene forkhead box D4 like 1 Neighboring gene PGM5P4 antisense RNA 1 Neighboring gene EZH inhibitory protein-like Neighboring gene phosphoglucomutase 5 pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:114328102-114328641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114334474-114334974 Neighboring gene uncharacterized LOC124907875 Neighboring gene family with sequence similarity 138 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. Wong A, et al. Genomics, 2004 Aug. PMID 15233989

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187131.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078621
    Related
    ENST00000671438.1

  2. NR_187132.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078621

  3. NR_187133.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078621

  4. NR_187134.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL078621
    Related
    ENST00000668674.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    113512124..113515294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    113936655..113939825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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