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LOC101927468 uncharacterized LOC101927468 [ Homo sapiens (human) ]

Gene ID: 101927468, updated on 17-Jun-2024

Summary

Gene symbol
LOC101927468
Gene description
uncharacterized LOC101927468
See related
Ensembl:ENSG00000227733
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 1.2), endometrium (RPKM 0.9) and 19 other tissues See more
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Genomic context

See LOC101927468 in Genome Data Viewer
Location:
1q21.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (148208093..148247071, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (146560353..146599329)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (147680370..147719342, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2805 Neighboring gene RNA, 5S ribosomal pseudogene 57 Neighboring gene NANOG hESC enhancer GRCh37_chr1:147691416-147691917 Neighboring gene NANOG hESC enhancer GRCh37_chr1:147710223-147710724 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:147735767-147736426 Neighboring gene Sharpr-MPRA regulatory region 3868 Neighboring gene tRNA-Gln (anticodon CTG) 4-1 Neighboring gene RNA, variant U1 small nuclear 22

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Clone Names

  • FLJ34369

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120331.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC239809
    Related
    ENST00000658395.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    148208093..148247071 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    146560353..146599329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)