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LINC02688 long intergenic non-protein coding RNA 2688 [ Homo sapiens (human) ]

Gene ID: 101927503, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02688provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2688provided by HGNC
Primary source
HGNC:HGNC:54184
See related
Ensembl:ENSG00000254872 AllianceGenome:HGNC:54184
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in stomach (RPKM 3.0), duodenum (RPKM 1.8) and 6 other tissues See more
Orthologs
all
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Genomic context

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See LINC02688 in Genome Data Viewer
Location:
11p15.5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (1049880..1055764)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (1119757..1125641)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (1049880..1055764)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene RNA, U6 small nuclear 1025, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:953983-954591 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:954699-955362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:955363-956024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:969867-970368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:970369-970868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:994284-994808 Neighboring gene mucin 6, oligomeric mucus/gel-forming (gene/pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1042897-1043398 Neighboring gene uncharacterized LOC124902605 Neighboring gene uncharacterized LOC107987157 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:1060443-1061642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1077965-1078465 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1078491-1079026 Neighboring gene mucin 2, oligomeric mucus/gel-forming

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

Clone Names

  • DKFZp686I0536

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160890.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139749
    Related
    ENST00000737480.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    1049880..1055764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_015148966.2 Reference GRCh38.p14 PATCHES

    Range
    46620..52504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187681.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    124273..130157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    1119757..1125641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001323425.1: Suppressed sequence

    Description
    NM_001323425.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

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