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ZNF529-AS1 ZNF529 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927599, updated on 10-Dec-2024

Summary

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Official Symbol
ZNF529-AS1provided by HGNC
Official Full Name
ZNF529 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51275
See related
Ensembl:ENSG00000233527 AllianceGenome:HGNC:51275
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 1.1), thyroid (RPKM 1.1) and 25 other tissues See more
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Genomic context

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See ZNF529-AS1 in Genome Data Viewer
Location:
19q13.12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (36573070..36594708)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (39248350..39269993)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (37063972..37085610)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene CTBP2 pseudogene 7 Neighboring gene zinc finger protein 260 Neighboring gene H3K27ac hESC enhancers GRCh37_chr19:37018470-37019180 and GRCh37_chr19:37019181-37019889 Neighboring gene zinc finger protein 529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14529 Neighboring gene zinc finger protein 382 Neighboring gene zinc finger protein 461

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients. Ma Y, et al. BMC Bioinformatics, 2023 Feb 17. PMID 36803542, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients.
    Title: LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Clone Names

  • AC092295.7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110703.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript.
    Source sequence(s)
    AC092295
    Related
    ENST00000687100.1

  2. NR_110704.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AC092295
    Related
    ENST00000592880.7

  3. NR_110705.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate internal exon, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AC092295
    Related
    ENST00000729500.1

  4. NR_110706.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons and contains an alternate 3' terminal exon, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AC092295, CK820070, CK820071

  5. NR_173341.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295

  6. NR_173342.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295

  7. NR_173343.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295
    Related
    ENST00000448373.6

  8. NR_173344.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295

  9. NR_173345.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295
    Related
    ENST00000729512.1

  10. NR_173346.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295

  11. NR_173347.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295
    Related
    ENST00000729491.1

  12. NR_173348.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092295
    Related
    ENST00000729497.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    36573070..36594708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    39248350..39269993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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