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LOC101927702 uncharacterized LOC101927702 [ Homo sapiens (human) ]

Gene ID: 101927702, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101927702
Gene description
uncharacterized LOC101927702
See related
Ensembl:ENSG00000254718
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.4) See more
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Genomic context

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See LOC101927702 in Genome Data Viewer
Location:
14q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (60240126..60245636, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (54446419..54451929, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (60706844..60712354, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene proteasome subunit alpha 3 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8469 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8471 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8472 Neighboring gene ribosomal protein L17 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8473 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60715285-60716013 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5810 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1A Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:60748999-60750198 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60782171-60783050 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60783051-60783930 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:60785365-60785909 Neighboring gene long intergenic non-protein coding RNA 2322

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CTD-2184C24.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188027.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157756
    Related
    ENST00000553775.2

  2. NR_188028.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157756
    Related
    ENST00000553269.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    60240126..60245636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    54446419..54451929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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