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LAMA5-AS1 LAMA5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928158, updated on 22-Oct-2024

Summary

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Official Symbol
LAMA5-AS1provided by HGNC
Official Full Name
LAMA5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40334
See related
Ensembl:ENSG00000228812 AllianceGenome:HGNC:40334
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in placenta (RPKM 2.5), skin (RPKM 1.6) and 24 other tissues See more
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Genomic context

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See LAMA5-AS1 in Genome Data Viewer
Location:
20q13.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62353010..62356480)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64148671..64152137)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (60928066..60931536)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene laminin subunit alpha 5 Neighboring gene microRNA 4758 Neighboring gene uncharacterized LOC124904946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18197 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60929780-60930720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60930721-60931659 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60935576-60936276 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60936277-60936975 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60936976-60937675 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60937676-60938374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60939075-60939774 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60939775-60940474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60941173-60941872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13109 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60943971-60944670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60946071-60946768 Neighboring gene uncharacterized LOC105372708 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60949451-60950054 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60950055-60950656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60953065-60953666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60956340-60957020 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:60961625-60962316 Neighboring gene RPS21 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107413
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109922.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL354836, BM670160, BM700151

  2. NR_109923.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and uses an alternate splice site compared to variant 1.
    Source sequence(s)
    AL354836, BM670160, BQ188912
    Related
    ENST00000456721.5

  3. NR_109924.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice compared to variant 1.
    Source sequence(s)
    AL354836, BM670160, CD675432
    Related
    ENST00000478167.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    62353010..62356480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64148671..64152137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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