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LINC01526 long intergenic non-protein coding RNA 1526 [ Homo sapiens (human) ]

Gene ID: 101928770, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01526provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1526provided by HGNC
Primary source
HGNC:HGNC:51265
See related
Ensembl:ENSG00000224995 AllianceGenome:HGNC:51265
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Lnc-FAM46A-1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01526 in Genome Data Viewer
Location:
6q14.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (81813286..81814192, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (83022694..83023597, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (82523003..82523909, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:82462059-82462559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24774 Neighboring gene uncharacterized LOC105377873 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24775 Neighboring gene terminal nucleotidyltransferase 5A Neighboring gene long intergenic non-protein coding RNA 2542 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:82647366-82648565 Neighboring gene MPRA-validated peak5921 silencer Neighboring gene Sharpr-MPRA regulatory region 11142 Neighboring gene uncharacterized LOC107986617 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24776 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:82853903-82855102 Neighboring gene inhibitor of Bruton tyrosine kinase Neighboring gene RNA, U6 small nuclear 130, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA deregulation in tongue squamous cell carcinoma. Gao W, et al. Biomed Res Int, 2014. PMID 25045670, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126363.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC038196
    Related
    ENST00000441949.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    81813286..81814192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    83022694..83023597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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