The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference assembly

Genomic

1. NC_015116.1 Reference assembly

   Range

   2716..5337

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. YP_004222728.1 pol polyprotein, partial [Avian leukemia virus]

   See identical proteins and their annotated locations for YP_004222728.1

   Status: PROVISIONAL

   UniProtKB/TrEMBL

   A0A6M8YIV8, E9N629

   Conserved Domains (8) summary

   COG2801
   Location:589 → 730

   Tra5; Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]

   cd01645
   Location:18 → 230

   RT_Rtv; RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and ...

   pfam00078
   Location:61 → 230

   RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)

   pfam00552
   Location:794 → 839

   IN_DBD_C; Integrase DNA binding domain

   pfam00665
   Location:629 → 739

   rve; Integrase core domain

   pfam02022
   Location:577 → 614

   Integrase_Zn; Integrase Zinc binding domain

   pfam06817
   Location:248 → 291

   RVT_thumb; Reverse transcriptase thumb domain

   cl14782
   Location:446 → 571

   RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8