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17.5 holin [ Vibrio phage ICP3 ]

Gene ID: 10228830, updated on 18-Aug-2023

Summary

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Gene symbol
17.5
Gene description
holin
Locus tag
ViPhICP3_gp48
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Vibrio phage ICP3 (nat-host: Vibrio cholerae)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Autographiviridae; Studiervirinae; Chatterjeevirus; Chatterjeevirus ICP3
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Genomic context

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Sequence:
NC_015159.1 (35258..35452)

NC_015159.1Genomic Context describing neighboring genes Neighboring gene internal virion protein with endolysin domain Neighboring gene tail fiber protein Neighboring gene hypothetical protein Neighboring gene terminase small subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_015159.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence of a dominant lineage of Vibrio cholerae-specific lytic bacteriophages shed by cholera patients over a 10-year period in Dhaka, Bangladesh. Seed KD, et al. mBio, 2011. PMID 21304168, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
holin
YP_004251291.1
  • similar to YP_418245.1 putative lysis protein in Vibriophage VP4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_015159.1 Reference assembly

    Range
    35258..35452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004251291.1 holin [Vibrio phage ICP3]

    See identical proteins and their annotated locations for YP_004251291.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2D0YLB4, A0A2D0Z0Z0, A0A2D0Z2N9, A0A2D0Z360, A0A2D0Z4M2, F1D044, F1D090, F1D0D8, F1D0I6, F1D0N3
    Conserved Domains (1) summary
    cl27843
    Location:2 → 64
    Phage_holin_2_2; Phage holin T7 family, holin superfamily II
Nucleotide Protein
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