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Gm38462 predicted gene, 38462 [ Mus musculus (house mouse) ]

Gene ID: 102634284, updated on 22-Oct-2024

Summary

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Official Symbol
Gm38462provided by MGI
Official Full Name
predicted gene, 38462provided by MGI
Primary source
MGI:MGI:5621347
See related
Ensembl:ENSMUSG00000052371 AllianceGenome:MGI:5621347
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hoxd3os1
Expression
Biased expression in ovary adult (RPKM 18.2), adrenal adult (RPKM 18.0) and 9 other tissues See more
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Genomic context

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See Gm38462 in Genome Data Viewer
Location:
2 C3; 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (74533347..74542402, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (74703003..74712058, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene homeobox D11 Neighboring gene STARR-seq mESC enhancer starr_04854 Neighboring gene homeobox D10 Neighboring gene homeobox D9 Neighboring gene homeobox D8 Neighboring gene homeobox D3, opposite strand 1 Neighboring gene homeobox D3 Neighboring gene homeobox D4 Neighboring gene STARR-seq mESC enhancer starr_04856 Neighboring gene microRNA 10b Neighboring gene Hoxd antisense growth associated long non-coding RNA Neighboring gene predicted gene 14424

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164327.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL928644
    Related
    ENSMUST00000132326.3

  2. NR_164328.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL928644
    Related
    ENSMUST00000371854.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    74533347..74542402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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