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Gm38521 predicted gene, 38521 [ Mus musculus (house mouse) ]

Gene ID: 102639549, updated on 17-Aug-2024

Summary

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Official Symbol
Gm38521provided by MGI
Official Full Name
predicted gene, 38521provided by MGI
Primary source
MGI:MGI:5621406
See related
AllianceGenome:MGI:5621406
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in testis adult (RPKM 4.3), bladder adult (RPKM 1.9) and 17 other tissues See more
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Genomic context

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See Gm38521 in Genome Data Viewer
Location:
2 E2; 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (104847466..104851070)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (105017121..105020725)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7844 Neighboring gene STARR-seq mESC enhancer starr_05298 Neighboring gene proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) Neighboring gene STARR-positive B cell enhancer mm9_chr2:104728128-104728428 Neighboring gene coiled-coil domain containing 73 Neighboring gene STARR-positive B cell enhancer mm9_chr2:104828551-104828851 Neighboring gene eukaryotic translation initiation factor 3, subunit M Neighboring gene NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_05302 Neighboring gene WT1 transcription factor, opposite strand Neighboring gene Wt1 promoter region

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_165821.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL606494, BY266246

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    104847466..104851070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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