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A930005G22Rik RIKEN cDNA A930005G22 gene [ Mus musculus (house mouse) ]

Gene ID: 102639568, updated on 2-Nov-2024

Summary

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Official Symbol
A930005G22Rikprovided by MGI
Official Full Name
RIKEN cDNA A930005G22 geneprovided by MGI
Primary source
MGI:MGI:3528178
See related
Ensembl:ENSMUSG00000124350 AllianceGenome:MGI:3528178
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in cerebellum; embryo; retina inner nuclear layer; and retina outer nuclear layer. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in CNS E14 (RPKM 1.4), CNS E11.5 (RPKM 1.3) and 8 other tissues See more
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Genomic context

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See A930005G22Rik in Genome Data Viewer
Location:
5; 5 F
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (115558653..115567563, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (115420594..115429504, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1305 Neighboring gene cytochrome c oxidase subunit 6A1 Neighboring gene RIKEN cDNA 4930401G09 gene Neighboring gene predicted gene 13832 Neighboring gene STARR-seq mESC enhancer starr_14119 Neighboring gene musashi RNA-binding protein 1 Neighboring gene phospholipase A2, group IB, pancreas

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168086.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117735

  2. NR_168255.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117735

  3. NR_168295.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117735
    Related
    ENSMUST00000263174.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    115558653..115567563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_166647.1: Suppressed sequence

    Description
    NR_166647.1: This RefSeq was removed because it was annotated on the wrong strand.

  2. NR_166648.1: Suppressed sequence

    Description
    NR_166648.1: This RefSeq was removed because it was annotated on the wrong strand.

  3. NR_166649.1: Suppressed sequence

    Description
    NR_166649.1: This RefSeq was removed because it was annotated on the wrong strand.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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