U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02790 long intergenic non-protein coding RNA 2790 [ Homo sapiens (human) ]

Gene ID: 102723661, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
LINC02790provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2790provided by HGNC
Primary source
HGNC:HGNC:54313
See related
Ensembl:ENSG00000237435 AllianceGenome:HGNC:54313
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 5.8) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02790 in Genome Data Viewer
Location:
1p21.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (95992068..96022880)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (95840037..95870758)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (96457624..96488436)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:95983694-95984619 Neighboring gene long intergenic non-protein coding RNA 2607 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96048206-96048858 Neighboring gene uncharacterized LOC101928219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96134923-96135424 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96135425-96135924 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:96207937-96209136 Neighboring gene uncharacterized LOC124904592 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96468667-96469209 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96469210-96469751 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:96689610-96690110 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96724805-96725445 Neighboring gene RNA, U1 small nuclear 130, pseudogene Neighboring gene long intergenic non-protein coding RNA 1787 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:96828291-96829490

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI025778, BX095322, KF454988
    Related
    ENST00000451675.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    95992068..96022880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    95840037..95870758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials