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LINC01389 long intergenic non-protein coding RNA 1389 [ Homo sapiens (human) ]

Gene ID: 102724077, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01389provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1389provided by HGNC
Primary source
HGNC:HGNC:50661
See related
AllianceGenome:HGNC:50661
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 1.3), testis (RPKM 0.5) and 11 other tissues See more
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Genomic context

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See LINC01389 in Genome Data Viewer
Location:
1p33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (47380796..47437317, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (47259258..47315784, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (47846468..47902989, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene STIL centriolar assembly protein Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:47772177-47772742 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:47779829-47780558 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:47799401-47800204 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:47800205-47801008 Neighboring gene cytidine/uridine monophosphate kinase 1 Neighboring gene Sharpr-MPRA regulatory region 7712 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 855 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47899798-47900313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 857 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 858 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:47905134-47905903 Neighboring gene forkhead box E3 Neighboring gene FOXD2 adjacent opposite strand RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47911867-47912367 Neighboring gene forkhead box D2 Neighboring gene ribosomal protein L21 pseudogene 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126355.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI393217, AL607122, BX102452, DW420503

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    47380796..47437317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    47259258..47315784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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