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ATF6-DT ATF6 divergent transcript [ Homo sapiens (human) ]

Gene ID: 102724329, updated on 22-Oct-2024

Summary

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Official Symbol
ATF6-DTprovided by HGNC
Official Full Name
ATF6 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55826
See related
Ensembl:ENSG00000226889 AllianceGenome:HGNC:55826
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ATF6-DT in Genome Data Viewer
Location:
1q23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (161763783..161766147, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (161108110..161110475, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (161733573..161735937, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2002 Neighboring gene RNA, 7SL, cytoplasmic 466, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2003 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2005 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:161719946-161720592 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2007 Neighboring gene uncharacterized LOC124904444 Neighboring gene dual specificity phosphatase 12 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1488 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2008 Neighboring gene activating transcription factor 6 Neighboring gene proteasome activator subunit 3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187279.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359541
    Related
    ENST00000792243.1

  2. NR_187280.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359541
    Related
    ENST00000792244.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    161763783..161766147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    161108110..161110475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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