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SEC22B4P SEC22 homolog B4, pseudogene [ Homo sapiens (human) ]

Gene ID: 102724364, updated on 17-Jun-2024

Summary

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Official Symbol
SEC22B4Pprovided by HGNC
Official Full Name
SEC22 homolog B4, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:53892
See related
AllianceGenome:HGNC:53892
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 6.8), prostate (RPKM 6.4) and 25 other tissues See more
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Genomic context

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See SEC22B4P in Genome Data Viewer
Location:
1q21.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (146315557..146376562, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (148431827..148492803)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1071, pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:145140047-145140919 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:145139173-145140046 Neighboring gene nudix hydrolase 4 pseudogene 2 Neighboring gene peptidylprolyl isomerase A like 4H Neighboring gene tRNA-Asn (anticodon GTT) 24-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1276 Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC112268274 Neighboring gene uncharacterized LOC100996756

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    146315557..146376562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    148431827..148492803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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