POM121L15P POM121 transmembrane nucleoporin like 15, pseudogene [Homo sapiens (human)] - Gene

Summary

Official Symbol: POM121L15Pprovided by HGNC
Official Full Name: POM121 transmembrane nucleoporin like 15, pseudogeneprovided by HGNC
Primary source: HGNC:HGNC:55894
See related: Ensembl:ENSG00000293159 AllianceGenome:HGNC:55894
Gene type: pseudo
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary: This transcribed pseudogene is a member of the POM121 family of pseudogenes which are primate-specific. One of the non-coding transcripts on this locus is similar to a linc RNA, linc-UR-B1, thought to have a function in spermatogenesis (described in Rubino, et al, 2021; PMID: 33633774). [provided by RefSeq, Jan 2024]
Expression: Restricted expression toward testis (RPKM 59.4) See more
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Genomic context

Location:: 22q11.21

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	22	NC_000022.11 (18846286..18861064)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	22	NC_060946.1 (19221344..19236119)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	22	NC_000022.10 (18833799..18848577)

Chromosome 22 - NC_000022.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

POM121 transmembrane nucleoporin pseudogene

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

NR_135922.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This transcript has the same exon combination as long non-coding RNA, linc-UR-B1, described in PMID:33633774.

Source sequence(s)

AC008103, AC008132, AL045321, BC051721

Related

ENST00000412938.5
NR_170942.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

AC008103, AC008132