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LOC105370174 uncharacterized LOC105370174 [ Homo sapiens (human) ]

Gene ID: 105370174, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105370174
Gene description
uncharacterized LOC105370174
See related
Ensembl:ENSG00000288598
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370174 in Genome Data Viewer
Location:
13q14.11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (41517168..41564091)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (40736293..40783213)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:42031872-42032549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7629 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7631 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:42038640-42038854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7632 Neighboring gene olfactory receptor family 7 subfamily E member 37 pseudogene Neighboring gene regulator of cell cycle Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_32874 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:42114123-42114643 Neighboring gene uncharacterized LOC105370175 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:42127997-42128188 Neighboring gene microRNA 5006 Neighboring gene Sharpr-MPRA regulatory region 5362 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:42188550-42189542 Neighboring gene von Willebrand factor A domain containing 8 Neighboring gene FOXA motif-containing MPRA enhancer 169 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5292 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:42376466-42377665 Neighboring gene RNA, 7SL, cytoplasmic 515, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    41517168..41564091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_941901.2 RNA Sequence

    Related
    ENST00000674506.1

  2. XR_941902.2 RNA Sequence

  3. XR_941903.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    40736293..40783213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084041.1 RNA Sequence

  2. XR_007084042.1 RNA Sequence

  3. XR_007084043.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials