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LINC02307 long intergenic non-protein coding RNA 2307 [ Homo sapiens (human) ]

Gene ID: 105370471, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02307provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2307provided by HGNC
Primary source
HGNC:HGNC:53226
See related
Ensembl:ENSG00000258969 AllianceGenome:HGNC:53226
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02307 in Genome Data Viewer
Location:
14q21.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (43990532..44386061, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (38181419..38576975, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (44459735..44855264, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene keratin 8 pseudogene 2 Neighboring gene Rho GTPase activating protein 16, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:44223955-44224534 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:44271803-44273002 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_34015 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:44340454-44341164 Neighboring gene NANOG hESC enhancer GRCh37_chr14:44418560-44419070 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_34039 Neighboring gene eukaryotic translation initiation factor 4B pseudogene 1 Neighboring gene chromosome 11 open reading frame 58 pseudogene Neighboring gene MPRA-validated peak2140 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:44785502-44786701 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2277 Neighboring gene MPRA-validated peak2143 silencer Neighboring gene Sharpr-MPRA regulatory region 10127 Neighboring gene MPRA-validated peak2144 silencer Neighboring gene fibrous sheath CABYR binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187192.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109766, AL135961, AL161752
    Related
    ENST00000654351.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    43990532..44386061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    38181419..38576975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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