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FAM78B-AS1 FAM78B antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105371586, updated on 17-Sep-2024

Summary

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Official Symbol
FAM78B-AS1provided by HGNC
Official Full Name
FAM78B antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40639
See related
AllianceGenome:HGNC:40639
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 1.2), testis (RPKM 0.7) and 20 other tissues See more
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Genomic context

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See FAM78B-AS1 in Genome Data Viewer
Location:
1q24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (166080736..166091567)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (165426748..165437587)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (166049973..166060804)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:166009027-166010226 Neighboring gene RPS3A pseudogene 10 Neighboring gene RNA, 5S ribosomal pseudogene 64 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:166033205-166033704 Neighboring gene MPRA-validated peak439 silencer Neighboring gene family with sequence similarity 78 member B Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_946 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:166097641-166098142 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_966 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:166135105-166136007 Neighboring gene uncharacterized LOC112268276 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2025 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1002 Neighboring gene microRNA 921 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1510 Neighboring gene EWS RNA binding protein 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184316.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL626787

  2. NR_184317.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL626787

  3. NR_184318.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL626787

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    166080736..166091567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    165426748..165437587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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