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LOC105371654 uncharacterized LOC105371654 [ Homo sapiens (human) ]

Gene ID: 105371654, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105371654
Gene description
uncharacterized LOC105371654
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371654 in Genome Data Viewer
Location:
1q31.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (186184107..186185748, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (185538779..185540420, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985239 Neighboring gene MPRA-validated peak505 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:185554623-185555822 Neighboring gene long intergenic non-protein coding RNA 1350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2245 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:185615105-185616018 Neighboring gene uncharacterized GS1-204I12.4 Neighboring gene NANOG hESC enhancer GRCh37_chr1:185663280-185663781 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185668941-185669602 Neighboring gene MPRA-validated peak509 silencer Neighboring gene hemicentin 1 Neighboring gene MPRA-validated peak510 silencer Neighboring gene MPRA-validated peak511 silencer Neighboring gene Sharpr-MPRA regulatory region 5860 Neighboring gene MPRA-validated peak512 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185917425-185918340 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:185922788-185923626 Neighboring gene MPRA-validated peak513 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:186156636-186157835 Neighboring gene MPRA-validated peak514 silencer Neighboring gene uncharacterized LOC124904471 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:186214031-186214197 Neighboring gene RNA, U6 small nuclear 1240, pseudogene Neighboring gene proteoglycan 4 Neighboring gene translocated promoter region, nuclear basket protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    186184107..186185748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007066772.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    185538779..185540420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070928.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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