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LOC105371720 uncharacterized LOC105371720 [ Homo sapiens (human) ]

Gene ID: 105371720, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105371720
Gene description
uncharacterized LOC105371720
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371720 in Genome Data Viewer
Location:
17q11.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (30236791..30252233)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (31181325..31196782)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:28443345-28444544 Neighboring gene microRNA 3184 Neighboring gene microRNA 423 Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28468415-28468916 Neighboring gene uncharacterized LOC124903970 Neighboring gene solute carrier family 6 member 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11991 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28549461-28549976 Neighboring gene MPRA-validated peak2787 silencer Neighboring gene serotonin transporter intronic VNTR enhancer Neighboring gene solute carrier family 6 member 4 gene promoter Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28565347-28566247 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:28575475-28576674 Neighboring gene bleomycin hydrolase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8394 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8395 Neighboring gene RNA, U6 small nuclear 1267, pseudogene Neighboring gene uncharacterized LOC124903971

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    30236791..30252233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752824.2 RNA Sequence

  2. XR_007065698.1 RNA Sequence

  3. XR_007065695.1 RNA Sequence

  4. XR_007065696.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    31181325..31196782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087354.1 RNA Sequence

  2. XR_007087356.1 RNA Sequence

  3. XR_007087353.1 RNA Sequence

  4. XR_007087355.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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