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LOC105372524 uncharacterized LOC105372524 [ Homo sapiens (human) ]

Gene ID: 105372524, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105372524
Gene description
uncharacterized LOC105372524
See related
Ensembl:ENSG00000232448
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372524 in Genome Data Viewer
Location:
20p12.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (10172429..10200830)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (10215289..10243692)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (10153077..10181478)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene PPARG activating RBM14 associated lncRNA 1 Neighboring gene SNAP25 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12670 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:10028171-10028363 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:10029614-10030813 Neighboring gene ankyrin repeat and EF-hand domain containing 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:10055014-10056213 Neighboring gene uncharacterized LOC124904959 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:10221152-10221653 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:10221654-10222154 Neighboring gene synaptosome associated protein 25 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:10281144-10282061

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187929.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354824
    Related
    ENST00000662058.1

  2. NR_187930.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354824

  3. NR_187931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354824

  4. NR_187932.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354824

  5. NR_187933.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354824

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    10172429..10200830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    10215289..10243692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials