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LOC105372777 uncharacterized LOC105372777 [ Homo sapiens (human) ]

Gene ID: 105372777, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372777
Gene description
uncharacterized LOC105372777
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372777 in Genome Data Viewer
Location:
21q22.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (31255420..31262458)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (29623080..29630141)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61959 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18351 Neighboring gene keratin associated protein 19-8 Neighboring gene ubiquitin protein ligase E3A pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18353 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:32530991-32531520 Neighboring gene TIAM Rac1 associated GEF 1 Neighboring gene Sharpr-MPRA regulatory region 15669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:32554821-32555320 Neighboring gene MPRA-validated peak4402 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:32710674-32711873 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:32738744-32739943 Neighboring gene MPRA-validated peak4404 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr21:32822900-32823113 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:32842913-32843876 Neighboring gene MTRES1 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32867589-32868090 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32868091-32868590 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:32894311-32894810 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr21:32917456-32918188 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32925735-32926454 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:32926455-32927174 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:32929546-32930359 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:32931173-32931985 Neighboring gene TIAM1 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    31255420..31262458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937661.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    29623080..29630141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089913.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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