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LOC105372859 uncharacterized LOC105372859 [ Homo sapiens (human) ]

Gene ID: 105372859, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105372859
Gene description
uncharacterized LOC105372859
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 6.7), colon (RPKM 3.9) and 25 other tissues See more
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Genomic context

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See LOC105372859 in Genome Data Viewer
Location:
22q11.21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (19291947..19351552)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (19668515..19727842)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene clathrin heavy chain like 1 Neighboring gene keratin 18 pseudogene 62 Neighboring gene dishevelled segment polarity protein 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19262319-19262820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19262821-19263320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19278431-19278944 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:19279055-19279239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19284079-19284580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19284581-19285080 Neighboring gene histone cell cycle regulator Neighboring gene RNA, 7SL, cytoplasmic 168, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18658 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:19418111-19418858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13459 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13460 Neighboring gene mitochondrial ribosomal protein L40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    19291947..19351552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938002.3 RNA Sequence

  2. XR_938000.3 RNA Sequence

  3. XR_938001.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    19668515..19727842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090442.1 RNA Sequence

  2. XR_007090443.1 RNA Sequence

  3. XR_007090444.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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