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LOC105374589 uncharacterized LOC105374589 [ Homo sapiens (human) ]

Gene ID: 105374589, updated on 17-Jun-2024

Summary

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Gene symbol
LOC105374589
Gene description
uncharacterized LOC105374589
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374589 in Genome Data Viewer
Location:
2p16.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (47755479..47760491)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (47760416..47765391)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mutS homolog 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15738 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:47948619-47949424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15739 Neighboring gene NME2 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:47975285-47975438 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15740 Neighboring gene RBIS pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:48008525-48008706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15741 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11467 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11469 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15742 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15743 Neighboring gene ribosomal protein L36a pseudogene 15 Neighboring gene mutS homolog 6 Neighboring gene F-box protein 11 Neighboring gene Sharpr-MPRA regulatory region 9679 Neighboring gene RPS27A pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    47755479..47760491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_940070.3 RNA Sequence

  2. XR_940067.3 RNA Sequence

  3. XR_940068.3 RNA Sequence

  4. XR_007086313.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    47760416..47765391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072046.1 RNA Sequence

  2. XR_007072044.1 RNA Sequence

  3. XR_007072045.1 RNA Sequence

  4. XR_007072047.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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